Web Services


Services marked with an 'A' can be executed in Altix Shared Memory computer.



Bioinformatics




Alignment

runEmbossConsFromAlignment Sorry, no documentation yet.
runNCBIFormatdb A Sorry, no documentation yet.


Alignment > Multiple_Sequence_Comparison

runClustalwFast A Sorry, no documentation yet.
runClustalwFull A Sorry, no documentation yet.
runMuscleFromSequences A Sorry, no documentation yet.
runTcoffeeEvaluateAlignments A Sorry, no documentation yet.
runTcoffeeFromProfiles A Sorry, no documentation yet.
runTcoffeeFromSequences A Sorry, no documentation yet.


Alignment > Pairwise_Sequence_Comparison > Pairwise_Local_Aligning

runBlat A Sorry, no documentation yet.
runFastaForAminoAcids A Sorry, no documentation yet.
runFastaForNucleotides A Sorry, no documentation yet.
runFastx A Sorry, no documentation yet.
runFasty A Sorry, no documentation yet.
runNCBIBlastAgainstDB A Sorry, no documentation yet.
runNCBIBlastn A Sorry, no documentation yet.
runNCBIBlastn_2Seqs A Sorry, no documentation yet.
runNCBIBlastp A Sorry, no documentation yet.
runNCBIBlastp_2Seqs A Sorry, no documentation yet.
runNCBIBlastx A Sorry, no documentation yet.
runNCBIBlastx_2Seqs A Sorry, no documentation yet.
runNCBITBlastn A Sorry, no documentation yet.
runNCBITBlastn_2Seqs A Sorry, no documentation yet.
runNCBITBlastx A Sorry, no documentation yet.
runNCBITBlastx_2Seqs A Sorry, no documentation yet.
runPSIBlast A Sorry, no documentation yet.
runPSIBlastXML A Sorry, no documentation yet.
runTFastx A Sorry, no documentation yet.
runTFasty A Sorry, no documentation yet.
runWUBlastn A Sorry, no documentation yet.
runWUBlastn_2Seqs A Sorry, no documentation yet.
runWUBlastp A Sorry, no documentation yet.
runWUBlastp_2Seqs A Sorry, no documentation yet.
runWUBlastx A Sorry, no documentation yet.
runWUBlastx_2Seqs A Sorry, no documentation yet.
runWUTBlastn A Sorry, no documentation yet.
runWUTBlastn_2Seqs A Sorry, no documentation yet.
runWUTBlastx A Sorry, no documentation yet.
runWUTBlastx_2Seqs A Sorry, no documentation yet.


Alignment > Profiling

runHMMBuild A Sorry, no documentation yet.
runHMMPfam A Sorry, no documentation yet.
runHMMSearchAgainstDB A Sorry, no documentation yet.
runHMMSearchAgainstSeqs A Sorry, no documentation yet.
runRPSBlast A Sorry, no documentation yet.


Alignment > Single_Sequence_Comparison > Pairwise_2Global_Aligning

runEmbossNeedleFromSequences A Sorry, no documentation yet.


Alignment > Single_Sequence_Comparison > Pairwise_2Local_Aligning

runEmbossWaterFromSequences A Sorry, no documentation yet.


Biochemestry > EnzymeKinetics

runEmbossFindkm A Sorry, no documentation yet.


Database > Retrieving > GettingSequences > GettingAminoacids

getAminoAcidSequence Sorry, no documentation yet.
getFeatureAASequenceFromUniprot Sorry, no documentation yet.


Database > Retrieving > GettingSequences > GettingNucleotides

getCDSSequence Sorry, no documentation yet.
getNucleotideSequence Sorry, no documentation yet.
getSequenceByRegionFromENSEMBL Sorry, no documentation yet.
getSequencesFromENSEMBLHomology Sorry, no documentation yet.


Database > Retrieving > GettingStructures

getAtomsFromPDBID Sorry, no documentation yet.
getEntryFromPDB Sorry, no documentation yet.


Database > Retrieving > GettingText

fromPDBTextToDSSP Sorry, no documentation yet.
getCodonTableFromEmboss Sorry, no documentation yet.
getDocumentationFromProsite Sorry, no documentation yet.
getEntryFromDSSP Sorry, no documentation yet.
getEntryFromEMBL Sorry, no documentation yet.
getEntryFromFSSP Sorry, no documentation yet.
getEntryFromGenBank Sorry, no documentation yet.
getEntryFromHSSP Sorry, no documentation yet.
getEntryFromOMIM Sorry, no documentation yet.
getEntryFromPfam Sorry, no documentation yet.
getEntryFromProdom Sorry, no documentation yet.
getEntryFromProsite Sorry, no documentation yet.
getEntryFromRefSeq Sorry, no documentation yet.
getEntryFromSwissProt Sorry, no documentation yet.
getEntryFromTrEMBL Sorry, no documentation yet.
getEntryFromUniProt Sorry, no documentation yet.
getGOTerm Sorry, no documentation yet.
getmmCifFileFromPDBID Sorry, no documentation yet.


Database > Retrieving

browseCATHClassification Sorry, no documentation yet.
getCATHHierarchyCodesFromPDBID Sorry, no documentation yet.
getEnsemblIDsFromUniprot Sorry, no documentation yet.
getEntryFromCATH Sorry, no documentation yet.
getEntryFromSCOPDomainID Sorry, no documentation yet.
getEntryFromSCOPPath Sorry, no documentation yet.
getGraphFromTerm Sorry, no documentation yet.
getHSSPIDsFromUniprot Sorry, no documentation yet.
getHomologiesFromEnsembl Sorry, no documentation yet.
getPDBIDsFromUniprot Sorry, no documentation yet.
getTermsFromProduct Sorry, no documentation yet.
getUniprotAccessionsFromID Sorry, no documentation yet.
getUniprotIDsFromAccession Sorry, no documentation yet.
getUniprotIDsFromGOTerm Sorry, no documentation yet.


Database > Searching

getCATHDomainsFromPDBID Sorry, no documentation yet.
refineTextQueryOMIM Sorry, no documentation yet.
textQueryOMIM Sorry, no documentation yet.
textQueryUniprot Sorry, no documentation yet.


Distances > Phylogenetics > Distance_Matrix_Computing

runPhylipDnadist A Sorry, no documentation yet.
runPhylipProtdist A Sorry, no documentation yet.


Distances > Phylogenetics > Phylogenetics_Tree_Computing

runPhylipDnaml A Sorry, no documentation yet.
runPhylipDnamlk A Sorry, no documentation yet.
runPhylipDnapars A Sorry, no documentation yet.
runPhylipDnapenny A Sorry, no documentation yet.
runPhylipFitch A Sorry, no documentation yet.
runPhylipKitsch A Sorry, no documentation yet.
runPhylipNeighbor A Sorry, no documentation yet.
runPhylipProtpars A Sorry, no documentation yet.


StructuralStudies > PhysicoChemical_Properties

runEmbossAntigenicFromSequence A Sorry, no documentation yet.
runEmbossChargeFromSequence A Sorry, no documentation yet.
runEmbossIepFromSequence A Sorry, no documentation yet.
runEmbossOctanolFromSequence A Sorry, no documentation yet.
runEmbossPepinfoFromSequence A Sorry, no documentation yet.
runEmbossPepwindowFromSequence A Sorry, no documentation yet.
runEmbossPepwindowallFromSequences A Sorry, no documentation yet.
runProCheckFromPDBText Sorry, no documentation yet.


SequenceAnalysis

runEmbossDigestFromSequence A Sorry, no documentation yet.
runEmbossEmowse A Sorry, no documentation yet.
runEmbossSigcleaveFromSequence A Sorry, no documentation yet.
runEmbossTmapFromSequence A Sorry, no documentation yet.
runGenewise A Sorry, no documentation yet.


SequenceAnalysis > Composition

runEmbossCodcmpFromTables Sorry, no documentation yet.
runEmbossCuspFromSequence A Sorry, no documentation yet.
runEmbossPepstatsFromSequence A Sorry, no documentation yet.


SequenceAnalysis > Nucleotic_Motifs



SequenceAnalysis > Protein_Motifs

getProdomDomainsFromUniProt Sorry, no documentation yet.
getPrositeAnnStructure Sorry, no documentation yet.
getPrositeAnnStructureFromPDBID Sorry, no documentation yet.
runEmbossPatmatdb A Sorry, no documentation yet.
runEmbossPatmatdbFromSequence A Sorry, no documentation yet.
runEmbossPatmatmotifsFromSequence A Sorry, no documentation yet.
runPPSearchAgainstProsite A Sorry, no documentation yet.
runPratt A Sorry, no documentation yet.
runPs_scanAgainstProsite A Sorry, no documentation yet.
runPs_scanAgainstSequence A Sorry, no documentation yet.
searchBLOCKS A Sorry, no documentation yet.
searchInterPro A Sorry, no documentation yet.


StructuralStudies > Protein_Secondary_Structures

runEmbossPepcoilFromSequence A Sorry, no documentation yet.


SequenceAnalysis > Repetitions

runEmbossEquicktandemFromSequence A Sorry, no documentation yet.


SequenceAnalysis > Restrictions

runEmbossRestrictFromSequence A Sorry, no documentation yet.


Translating

runEmbossGetorfFromSequence A Sorry, no documentation yet.
runEmbossTranseqFromSequence A Sorry, no documentation yet.




ObjectHandling


loadPersistentFile Sorry, no documentation yet.
getPersistentFile Sorry, no documentation yet.


Converting

fromClustalwToPhylip Sorry, no documentation yet.
fromFastaToCommentedAASequence Sorry, no documentation yet.
fromFastaToCommentedNASequence Sorry, no documentation yet.
fromFastaToGenericSequence Sorry, no documentation yet.
fromGenericSequenceToFasta Sorry, no documentation yet.
fromGenericToAminoAcidSequence Sorry, no documentation yet.
fromGenericToNucleotideSequence Sorry, no documentation yet.
fromNDBTextToPDBText Sorry, no documentation yet.
fromPDBTextToNDBText Sorry, no documentation yet.
fromPDBTextTommCIF Sorry, no documentation yet.
fromXYDataTextToArrayFloat Sorry, no documentation yet.


Parsing

parseENSEMBLSliceInformation Sorry, no documentation yet.
parseFeatureAASequenceWithArticle Sorry, no documentation yet.
parseMWfromMWAnnotatedAASequence Sorry, no documentation yet.
parseMatrixFromMotif Sorry, no documentation yet.
parsePatternFromMotif Sorry, no documentation yet.
parseRulesFromMotif Sorry, no documentation yet.
runBlast2gene A Sorry, no documentation yet.


Displaying

displayDomainsFromAnnStructure Sorry, no documentation yet.
multiplotArrayXYData Sorry, no documentation yet.
plotArrayXYData Sorry, no documentation yet.