Resources
Computational Resources


Our node is integrated in the computational structure of BSC, the following resources are available for INB users.



Mare Nostrum
  • Peak system performance of 94,21 teraflops
  • 10,240 64-bit IBM PowerPC 970MP processors
  • 2,560 IBM JS21 blade servers
  • 280 + 90 TB of disk storage
  • 20 TB of memory
  • Myrinet Interconnection network

SGI Altix 4700
  • 64 CPUs Dual Core Montecito, 1.6 GHz (IA-64, 128 cores)
  • 512 Gb RAM
  • 446 Gb Storage
CLL-ICGC
  • 4 nodes (12 cores per node).
  • 24 CPUs 2 AMD Opteron, 2.4GHz (48 cores).
  • 32 GB de memoria RAM per node.
  • 16 Disks of 300GB SAS.
  • 2 Disks of 146GB SAS.

Storage System Sun StorageTek 4500, 32 TB




Software


  • Alignment programs

    • NCBI Blast
    • WU Blast
    • Blat
    • Clustalw
    • FASTA
    • HMMER
    • T-coffee

  • Phylogenetic programs

    • Phylip

  • Molecular dynamics

    • Namd
    • Amber

  • Sequence Motives and Profiles

    • Iprscan
    • Blimps
    • ppsearch
    • pratt
    • prodom
    • ps_scan

  • Suites

    • EMBOSS
Databases



Database

Flat

SQL

CATH


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EMBL

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GenBank

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GO


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INTERPRO

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OMIM

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PDB

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DSSP,FSSP,HSSP

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Prosite

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+

RefSeq

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SCOP


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UniProt

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