Resources
Computational Resources


Our node is integrated in the computational structure of BSC, the following resources are available for INB users.







Shared-memory SGI Altix UV100
  • 96 CPUs Nehalem-EX Intel(R) Xeon(R), 2.67 GHz
  • 1.5TB RAM

MinoTauro (CUDA cores)
  • 126 nodes (2 Intel Xeon E5649e 6-core at 2,53GHz per node
  • 24 GB RAM per node
  • 250 GB local disk storage
  • 2 NVIDIA M2090 cards. Each containing:
    • 512 CUDA cores
    • 6GB of GDDR5 Memory
Cluster INB
  • 1 login node and 8 computing nodes. Each:
    • 2 processors Intel Xeon E5649 6-core at 2,53Ghz
    • 96 GB RAM
  • Linux Operating System SLES 11
Mare Nostrum 3
  • Peak system performance of 0.7 Petaflops
  • 25 iDataPlex compute racks. Each containing:
    • 84 IBM dx360 M4 compute nodes. Each containing:
      • 2x E5-2670 SandyBridge-EP 2.6GHz cache 20MB 8-core
      • 500GB 7200 rpm SATA II local HDD
      • 8x 4G DDR3-1600 DIMMs (2GB/core) Total: 32GB/node
      • Dual-port Infiniband QDR/FDR10 Mezzazine Card
    • 4 Mellanox 36-port Managed FDR10 IB Switches
    • 2 BNT RackSwitch G8052F (Management Network)
    • 2 BNT RackSwitch G8052F (GPFS Network)
    • 4 Power Distrbution Units
    • Dual-port Infiniband QDR/FDR10 Mezzazine Card
  • Infiniband Mellanox FDR10: High bandwidth used by MPI applications
  • Gigabit Ethernet: 10GbitEthernet network used by the GPFS Filesystem.
  • Operating System: Linux - SuSe Distribution 11 SP2

Shared-memory SGI Altix 4700
  • 64 CPUs Dual Core Montecito, 1.6 GHz (IA-64, 128 cores)
  • 512 Gb RAM
  • 446 Gb Storage
CLL-ICGC
  • 4 nodes (12 cores per node).
  • 24 CPUs 2 AMD Opteron, 2.4GHz (48 cores).
  • 32 GB de memoria RAM per node.
  • 16 Disks of 300GB SAS.
  • 2 Disks of 146GB SAS.

Shared storage systems

  • GPFS, 1.9 PB
  • Sun StorageTek 4500, 32 TB
  • DDR03, 32 TB




Software


  • Alignment programs

    • NCBI Blast
    • WU Blast
    • Blat
    • Clustalw
    • FASTA
    • HMMER
    • T-coffee

  • Phylogenetic programs

    • Phylip

  • Molecular dynamics

    • Namd
    • Amber

  • Sequence Motives and Profiles

    • Iprscan
    • Blimps
    • ppsearch
    • pratt
    • prodom
    • ps_scan

  • Suites

    • EMBOSS
Databases



Database

Flat

SQL

CATH


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EMBL

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GenBank

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GO


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INTERPRO

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OMIM

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PDB

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DSSP,FSSP,HSSP

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Prosite

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RefSeq

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SCOP


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UniProt

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