• NAME
• SYNOPSIS
• DESCRIPTION
• METHODS
  • getAminoAcidSequenceCollection
  • getBestHitsFromBlast
  • runCreateTreeFromClustalw

NAME

www_bioinfo_uma_es.pm - Library for www_bioinfo_uma_es services.

SYNOPSIS

Usage:

 my $obj = Object->new ('src_human','Uniprot');
 print $obj->toString;
 my $aaSeq = inb_bsc_es::getAminoAcidSequence(
        'input' => $obj
        ) -> {'sequence'};
 print $aaSeq->SequenceString;

refreshWSDL parameter:

All methods have an additional parameter 'refreshWSDL' used to refresh the service WSDL. Default value is "false".

 my $aaSeq = inb_bsc_es::getAminoAcidSequence(
        'input' => $obj,
	'refreshWSDL' => "true"
        ) -> {'sequence'};

See also runService.

DESCRIPTION

Library to run available services from www_bioinfo_uma_es.

METHODS

getAminoAcidSequenceCollection

Retrieves an AminoAcidSequence collection from an Object (id=ID or AC / namespace=database) collection

 (Sequences => [AminoAcidSequence]) = getAminoAcidSequenceCollection 
		(
			Identifiers => [Object]
		)

getBestHitsFromBlast

Gets the best hits from a Blast report using the E-Value as threshold

 (Best_hits => [Object]) = getBestHitsFromBlast 
		(
			Blast_report => BLAST__Text,
			Threshold => Float
		)

runCreateTreeFromClustalw

Produces a phylogenetic tree with dnd format from a ClustalW multiple alignment

 (Newick_tree => Newick_Text) = runCreateTreeFromClustalw 
		(
			Clustalw_output => Clustalw_Text
		)